Список публикаций сотрудников ЛАМА 2020-2025
  1. Agapov A, Lisitskaya L, Kussakina X, Kropocheva E, Esyunina D, Kulbachinskiy A. Unusual Guide-binding Pockets in RNA-targeting pAgo Nucleases. Journal of Molecular Biology. 2024 Oct 15;436(20):168745. doi: 10.1016/j.jmb.2024.168745. Q1.
  2. Galivondzhyan A, Sutormin D, Panteleev V, Kulbachinskiy A, Severinov K. The role of prokaryotic argonautes in resistance to type II topoisomerases poison ciprofloxacin. Biochem Soc Trans. 2024 Oct 30;52(5):2157-2166. doi: 10.1042/BST20240094. Q1.
  3. Agapov A, Panteleev V, Kropocheva E, Kanevskaya A, Esyunina D, Kulbachinskiy A. Prokaryotic Argonaute nuclease cooperates with co-encoded RNase to acquire guide RNAs and target invader DNA. Nucleic Acids Research. 2024 Jun 10;52(10):5895-5911. doi: 10.1093/nar/gkae345. Q1.
  4. Prostova M, Kanevskaya A, Panteleev V, Lisitskaya L, Perfilova Tugaeva KV, Sluchanko NN, Esyunina D, Kulbachinskiy A. DNA-targeting short Argonautes complex with effector proteins for collateral nuclease activity and bacterial population immunity. Nature Microbiology. 2024 May;9(5):1368-1381. doi: 10.1038/s41564-024-01654-5. Q1.
  5. Beskrovnaia M, Agapov A, Makasheva K, Zharkov DO, Esyunina D, Kulbachinskiy A. Sensing of DNA modifications by pAgo proteins in vitro. Biochimie. 2024 May;220:39-47. doi: 10.1016/j.biochi.2023.12.006. Q1.
  6. Lisitskaya L, Kropocheva E, Agapov A, Prostova M, Panteleev V, Yudin D, Ryazansky S, Kuzmenko A, Aravin AA, Esyunina D, Kulbachinskiy A. Bacterial Argonaute nucleases reveal different modes of DNA targeting in vitro and in vivo. Nucleic Acids Research. 2023 Jun 9;51(10):5106-5124. doi: 10.1093/nar/gkad290. Q1.
  7. Esyunina D, Okhtienko A, Olina A, Panteleev V, Prostova M, Aravin AA, Kulbachinskiy A. Specific targeting of plasmids with Argonaute enables genome editing. Nucleic Acids Research. 2023 May 8;51(8):4086-4099. doi: 10.1093/nar/gkad191. Q1.
  8. Panteleev V, Kropocheva E, Esyunina D, Kulbachinskiy A. Strong temperature effects on the fidelity of target DNA recognition by a thermophilic pAgo nuclease. Biochimie. 2023 Jun;209:142-149. doi: 10.1016/j.biochi.2023.02.007. Q1.
  9. Petushkov I, Esyunina D, Kulbachinskiy A. Effects of natural RNA modifications on the activity of SARS-CoV-2 RNA-dependent RNA polymerase. FEBS J. 2023 Jan;290(1):80-92. doi: 10.1111/febs.16587. Q2.
  10. Miropolskaya N, Kozlov M, Petushkov I, Prostova M, Pupov D, Esyunina D, Kochetkov S, Kulbachinskiy A. Effects of natural polymorphisms in SARS-CoV-2 RNA-dependent RNA polymerase on its activity and sensitivity to inhibitors in vitro. Biochimie. 2023 Mar;206:81-88. doi: 10.1016/j.biochi.2022.10.007. Q1.
  11. Кропочева ЕВ, Лисицкая ЛА, Агапов АА, Мусабиров АА, Кульбачинский АВ, Есюнина ДМ. Прокариотические белки-Аргонавты как инструмент биотехнологии (Обзор). Молекулярная биология. 2022 август 30:1-20. doi 10.1134/S0026893322060103. Q4.
  12. Lisitskaya L, Shin Y, Agapov A, Olina A, Kropocheva E, Ryazansky S, Aravin AA, Esyunina D, Murakami KS, Kulbachinskiy A. 2022. Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nature Communications. 2022 Aug 8;13(1):4624. doi: 10.1038/s41467-022-32079-5. Q1.
  13. Miropolskaya N, Petushkov I, Esyunina D, Kulbachinskiy A. Suppressor mutations in Escherichia coli RNA polymerase alter transcription initiation but do not affect translesion RNA synthesis in vitro. J Biol Chem. 2022 Jun 3;298(7):102099. doi: 10.1016/j.jbc.2022.102099. Q1.
  14. Kropocheva E, Kuzmenko A, Aravin AA, Esyunina D, Kulbachinskiy A. A programmable pAgo nuclease withuniversal guide and target specificity from the mesophilic bacterium Kurthia massiliensis. Nucleic Acids Research. 2022 Apr 19;49(7):4054-4065. doi: 10.1093/nar/gkab182. Q1.
  15. Oguienko A, Petushkov I, Pupov D, Esyunina D, Kulbachinskiy A. Universal functions of the σ finger in alternative σ factors during transcription initiation by bacterial RNA polymerase. RNA Biol. 2021 Nov;18(11):2028-2037. doi: 10.1080/15476286.2021.1889254. Q1.
  16. Shin Y, Qayyum MZ, Pupov D, Esyunina D, Kulbachinskiy A, Murakami KS. Structural basis of ribosomal RNA transcription regulation. Nat Commun. 2021 Jan 22;12(1):528. doi: 10.1038/s41467-020-20776-y. Q1.
  17. Lisitskaya L, Petushkov I, Esyunina D, Aravin A, Kulbachinskiy A. Recognition of double-stranded DNA by the Rhodobacter sphaeroides Argonaute protein. Biochem Biophys Res Commun. 2020 Dec 17;533(4):1484-1489. doi:10.1016/j.bbrc.2020.10.051. Q2.
  18. Kuzmenko A, Oguienko A, Esyunina D, Yudin D, Petrova M, Kudinova A, Maslova O, Ninova M, Ryazansky S, Leach D, Aravin AA, Kulbachinskiy A. DNA targeting and interference by a bacterial Argonaute nuclease. Nature. 2020 Nov;587(7835):632-637. doi: 10.1038/s41586-020-2605-1. Q1.
  19. Olina A, Kuzmenko A, Ninova M, Aravin AA, Kulbachinskiy A, Esyunina D. Genome-wide DNA sampling by Ago nuclease from the cyanobacterium Synechococcus elongatus. RNA Biol. 2020 May;17(5):677-688. doi: 10.1080/15476286.2020.1724716. Q1.
  20. Pletnev P, Pupov D, Pshanichnaya L, Esyunina D, Petushkov I, Nesterchuk M, Osterman I, Rubtsova M, Mardanov A, Ravin N, Sergiev P, Kulbachinskiy A, Dontsova O. Rewiring of growth-dependent transcription regulation by a point mutation in region 1.1 of the housekeeping σ factor. Nucleic Acids Res. 2020 Nov 4;48(19):10802-10819. doi: 10.1093/nar/gkaa798. Q1
  21. Agapov A, Ignatov A, Turtola M, Belogurov G, Esyunina D, Kulbachinskiy A. Role of the trigger loop in translesion RNA synthesis by bacterial RNA polymerase. J Biol Chem. 2020 Jul 10;295(28):9583-9595. doi: 10.1074/jbc.RA119.011844. Epub 2020 May 21. Q1.
  22. Prostova M, Kulbachinskiy A, Esyunina D. Antitermination protein P7 of bacteriophage Xp10 distinguishes different types of transcriptional pausing by bacterial RNA polymerase. Biochimie. 2020 Mar;170:57-64. doi: 10.1016/j.biochi.2019.12.011. Epub 2019 Dec 26. DOI: 10.1016/j.biochi.2019.12.011. Q2.
  23. Miropolskaya N, Kulbachinskiy A, Esyunina D. Factor-specific effects of mutations in the active site of RNA polymerase on RNA cleavage. Biochem Biophys Res Commun. 2020 Feb 26;523(1):165-170. doi: 10.1016/j.bbrc.2019.12.045. DOI: 10.1016/j.bbrc.2019.12.045. Q3.
  24. Патент № 2821993, Простова Мария Андреевна, Каневская Анна Александровна, Есюнина Дарья Михайловна, Кульбачинский Андрей Владимирович «Тест-система для детекции целевой ДНК или РНК с использованием короткого белка-аргонавта в комплексе с нуклеазой и флуоресцентного репортера», 2024.
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